GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.Frame_Retrieval_Analysis.Tab_Analysis.FrameCornerPlot.FrameCornerPlot module

Frame Corner Plot Module

This module provides a GUI panel for creating and displaying corner plots for atmospheric retrieval analysis. It handles plotting, data visualization, and statistical analysis of MCMC chains.

Classes:

FrameCornerPlot: Main panel class for corner plot functionality

GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.Frame_Retrieval_Analysis.Tab_Analysis.FrameCornerPlot.FrameCornerPlot.calculate_solar_metallicity(names_molecules=None, dataset='Lodders09')

Calculate Z/H (metals to hydrogen ratio) based on numerical abundances.

Parameters:

dataset – str, either “AGSS09” (Asplund et al. 2009) or “Lodders09” (Lodders et al. 2009)

Returns:

Z/H ratio (sum of all metal abundances relative to hydrogen)

Return type:

float

class GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.Frame_Retrieval_Analysis.Tab_Analysis.FrameCornerPlot.FrameCornerPlot.FrameCornerPlot(parent, color, row, column, path_default, frame_input, width, height, window, **kwargs)

Bases: MyPanel

A GUI panel for creating and displaying corner plots for atmospheric retrieval analysis.

This class provides functionality to: - Generate corner plots from MCMC chains - Display statistical information (likelihood, AIC, etc.) - Show reduced parameter plots - Display component details and comments - Plot temperature-pressure profiles

__init__(parent, color, row, column, path_default, frame_input, width, height, window, **kwargs)

Initialize the FrameCornerPlot panel.

Parameters:

• parent – Parent widget

• color – Background color for the panel

• row – Grid row position

• column – Grid column position

• path_default – Default path for the application

• frame_input – Input frame containing filter and table data

• width – Panel width

• height – Panel height

• window – Main window reference

• **kwargs – Additional keyword arguments for parent class

display_comp()

Display component details from the retrieval results.

Shows the string_res.txt file content in a popup window.

show_comments()

Display comments associated with the selected retrieval.

Reads comments from df_general_info.csv and displays them in a popup window.

plot()

Generate and display the main corner plot.

This method: 1. Extracts data from the selected retrieval 2. Processes MCMC chains using pre_plot function 3. Saves processed data to pickle files 4. Starts subprocess to generate corner plot 5. Creates additional plots (likelihood distribution, TP profile)

check_proc()

Check if the plotting subprocess has completed.

This method is called periodically to monitor the subprocess status. When complete, it updates the GUI with results and creates additional plots.

show()

Display the last generated corner plot.

Loads data from saved pickle file and displays the plot without regenerating it.

plot_reduce()

Generate a reduced corner plot with selected parameters only.

This method creates a corner plot using only the parameters specified in the reduced string text field.

show_reduced()

Display the last generated reduced corner plot.

Loads data from saved reduced pickle file and displays the plot.