GUIBRUSHR.Retrieval package

Subpackages

• GUIBRUSHR.Retrieval.ExofastMCMC package
  • Submodules
    • GUIBRUSHR.Retrieval.ExofastMCMC.StructReturnExofast module
      • StructReturnExofast
        • StructReturnExofast.oldpars
        • StructReturnExofast.oldchi2
        • StructReturnExofast.olddet
        • StructReturnExofast.__init__()
        • StructReturnExofast.naccept
    • GUIBRUSHR.Retrieval.ExofastMCMC.exofast_demc module
      • time_left_units()
      • likelihood()
    • GUIBRUSHR.Retrieval.ExofastMCMC.exofast_gelmanrubin module
      • exofast_gelmanrubin()
  • Module contents
• GUIBRUSHR.Retrieval.ModelCalculation package
  • Subpackages
    • GUIBRUSHR.Retrieval.ModelCalculation.Classes package
      • Submodules
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Atmosphere module
          • cloud_opas()
          • Atmosphere
            • Atmosphere.__init__()
            • Atmosphere.update_params()
            • Atmosphere.set_wl_range()
            • Atmosphere.init_pyratbay()
            • Atmosphere.read_opacities()
            • Atmosphere.calc_model()
            • Atmosphere.calc_model_contribution()
            • Atmosphere.opacity_contribution()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Bestpars module
          • Bestpars
            • Bestpars.list_bestpars
            • Bestpars.list_bestpars_initial_value
            • Bestpars.nfit
            • Bestpars.nchains
            • Bestpars.ncores
            • Bestpars.gamma_coeff
            • Bestpars.multiplier_chains
            • Bestpars.multiplier_cores
            • Bestpars.use_pool
            • Bestpars.use_parallel_init
            • Bestpars.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.LowResolutionData module
          • LowResolutionData
            • LowResolutionData.instrument
            • LowResolutionData.ldata_LR
            • LowResolutionData.step_LR
            • LowResolutionData.rdata_LR
            • LowResolutionData.errdata_LR_plus
            • LowResolutionData.errdata_LR_minus
            • LowResolutionData.vsys
            • LowResolutionData.npix
            • LowResolutionData.lbottom
            • LowResolutionData.ltop
            • LowResolutionData.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.NotRetrieval module
          • NotRetrieval
            • NotRetrieval.__init__()
            • NotRetrieval.adapt_opacities()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.ParamForModel module
          • ParamForModel
            • ParamForModel.name
            • ParamForModel.status
            • ParamForModel.scale
            • ParamForModel.constant_vmr
            • ParamForModel.range_min
            • ParamForModel.range_max
            • ParamForModel.isotope
            • ParamForModel.is_molec
            • ParamForModel.molec_formula
            • ParamForModel.mass
            • ParamForModel.name_for_list_molec
            • ParamForModel.starting_value_fixed
            • ParamForModel.starting_value_fixed_arr
            • ParamForModel.starting_value_variable
            • ParamForModel.starting_value_variable_arr
            • ParamForModel.value_in_retrieval
            • ParamForModel.value_arr_in_retrieval
            • ParamForModel.sigma_prior
            • ParamForModel.sigma_prior_arr
            • ParamForModel.__init__()
            • ParamForModel.update_starting_value()
            • ParamForModel.get_starting_value()
            • ParamForModel.get_starting_value_arr()
            • ParamForModel.append_elem()
            • ParamForModel.get_retrieval_value()
            • ParamForModel.get_retrieval_value_arr()
            • ParamForModel.boundaries_check()
            • ParamForModel.is_molec_func()
            • ParamForModel.molec_and_full_name()
            • ParamForModel.is_VMR_costant()
            • ParamForModel.get_mass()
            • ParamForModel.get_sigma_prior()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Pressure module
          • Pressure
            • Pressure.pressures
            • Pressure.range_min_pressures
            • Pressure.range_max_pressures
            • Pressure.n_layers
            • Pressure.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Random module
          • Random
            • Random.seed
            • Random.rng
            • Random.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Resolution module
          • Resolution
            • Resolution.instruments_HR
            • Resolution.instruments_LR
            • Resolution.lbl_high_res
            • Resolution.LR
            • Resolution.HR
            • Resolution.__init__()
            • Resolution.create_low_resolution_obj()
            • Resolution.high_resolution()
            • Resolution.low_resolution()
            • Resolution.only_high_resolution()
            • Resolution.only_low_resolution()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Retrieval module
          • Retrieval
            • Retrieval.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Smooth module
          • Smooth
            • Smooth.smooth_on
            • Smooth.smooth_size
            • Smooth.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.SpeciesMolec module
          • SpeciesMolec
            • SpeciesMolec.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Wavelength module
          • Wavelength
            • Wavelength.min_wl_hr
            • Wavelength.max_wl_hr
            • Wavelength.min_wl_lr
            • Wavelength.max_wl_lr
            • Wavelength.__init__()
      • Module contents
  • Submodules
    • GUIBRUSHR.Retrieval.ModelCalculation.ModelData module
      • get_param_array_initial_value()
      • ModelData
        • ModelData.path_default
        • ModelData.params_list
        • ModelData.list_multiple_param
        • ModelData.clight
        • ModelData.model_type
        • ModelData.atmosphere
        • ModelData.retrieval_data
        • ModelData.bestpars_data
        • ModelData.random_obj
        • ModelData.__init__()
        • ModelData.populate_from_manual_model()
        • ModelData.add_param_manual_model()
        • ModelData.read_df_parameters()
        • ModelData.parameter_management()
        • ModelData.read_df_information()
        • ModelData.night_data_extraction()
        • ModelData.get_value()
        • ModelData.get_index()
        • ModelData.calculate_mass_fraction()
        • ModelData.calculate_det()
        • ModelData.high_resolution_lhood()
        • ModelData.low_resolution_lhood()
        • ModelData.lh_function_gib()
        • ModelData.parallel_chain()
        • ModelData.run_multiple_processes_manager_version()
        • ModelData.run_multiple_processes()
        • ModelData.create_param_full()
  • Module contents

Submodules

• GUIBRUSHR.Retrieval.main module
  • parse_command_line_arguments()
  • create_model_object()
  • setup_output_directory()
  • run_mcmc_sampling()
  • cleanup_and_report_timing()
  • main()

Module contents

Retrieval Module for GUIBRUSHR

Contains all retrieval algorithms and model calculation components.