GUIBRUSHR.Retrieval package

Subpackages

• GUIBRUSHR.Retrieval.ExofastMCMC package
  • Submodules
    • GUIBRUSHR.Retrieval.ExofastMCMC.StructReturnExofast module
      • StructReturnExofast
        • StructReturnExofast.oldpars
        • StructReturnExofast.old_lhood
        • StructReturnExofast.old_log_prior
        • StructReturnExofast.__init__()
        • StructReturnExofast.naccept
    • GUIBRUSHR.Retrieval.ExofastMCMC.exofast_demc module
      • time_left_units()
      • likelihood()
    • GUIBRUSHR.Retrieval.ExofastMCMC.exofast_gelmanrubin module
      • exofast_gelmanrubin()
    • GUIBRUSHR.Retrieval.ExofastMCMC.map_optimizer module
      • compute_hessian_at_map()
      • find_map_start()
    • GUIBRUSHR.Retrieval.ExofastMCMC.process_safety module
      • mp_context()
      • install_parent_death_signal()
      • describe_exitcode()
    • GUIBRUSHR.Retrieval.ExofastMCMC.snooker module
      • draw_gamma_s()
      • sample_distinct_indices()
      • project_onto_line()
      • snooker_propose()
      • snooker_log_jacobian()
  • Module contents
• GUIBRUSHR.Retrieval.ModelCalculation package
  • Subpackages
    • GUIBRUSHR.Retrieval.ModelCalculation.Classes package
      • Submodules
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Atmosphere module
          • cloud_opas()
          • Atmosphere
            • Atmosphere.__init__()
            • Atmosphere.update_params()
            • Atmosphere.set_wl_range()
            • Atmosphere.init_pyratbay()
            • Atmosphere.read_opacities()
            • Atmosphere.calc_model()
            • Atmosphere.calc_model_contribution()
            • Atmosphere.opacity_contribution()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Bestpars module
          • Bestpars
            • Bestpars.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.LowResolutionData module
          • LowResolutionData
            • LowResolutionData.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.NotRetrieval module
          • NotRetrieval
            • NotRetrieval.__init__()
            • NotRetrieval.adapt_opacities()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.ParamForModel module
          • ParamForModel
            • ParamForModel.__init__()
            • ParamForModel.update_starting_value()
            • ParamForModel.get_starting_value()
            • ParamForModel.get_starting_value_arr()
            • ParamForModel.append_elem()
            • ParamForModel.get_retrieval_value()
            • ParamForModel.get_retrieval_value_arr()
            • ParamForModel.boundaries_check()
            • ParamForModel.is_molec_func()
            • ParamForModel.molec_and_full_name()
            • ParamForModel.is_VMR_costant()
            • ParamForModel.get_mass()
            • ParamForModel.get_sigma_prior()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Pressure module
          • Pressure
            • Pressure.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Random module
          • Random
            • Random.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Resolution module
          • Resolution
            • Resolution.__init__()
            • Resolution.create_low_resolution_obj()
            • Resolution.high_resolution()
            • Resolution.low_resolution()
            • Resolution.only_high_resolution()
            • Resolution.only_low_resolution()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Retrieval module
          • Retrieval
            • Retrieval.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Smooth module
          • Smooth
            • Smooth.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.SpeciesMolec module
          • SpeciesMolec
            • SpeciesMolec.__init__()
        • GUIBRUSHR.Retrieval.ModelCalculation.Classes.Wavelength module
          • Wavelength
            • Wavelength.__init__()
      • Module contents
  • Submodules
    • GUIBRUSHR.Retrieval.ModelCalculation.LikelihoodHR module
      • LikelihoodHR
        • LikelihoodHR.__init__()
        • LikelihoodHR.initial_param_array
        • LikelihoodHR.get_value()
        • LikelihoodHR.calculate_mass_fraction()
        • LikelihoodHR.calculate_log_prior()
        • LikelihoodHR.high_resolution_lhood()
    • GUIBRUSHR.Retrieval.ModelCalculation.LikelihoodLR module
      • LikelihoodLR
        • LikelihoodLR.__init__()
        • LikelihoodLR.low_resolution_lhood()
    • GUIBRUSHR.Retrieval.ModelCalculation.ModelData module
      • ModelData
        • ModelData.__init__()
        • ModelData.populate_from_manual_model()
        • ModelData.add_param_manual_model()
        • ModelData.read_df_parameters()
        • ModelData.parameter_management()
        • ModelData.read_df_information()
        • ModelData.night_data_extraction()
        • ModelData.get_value()
        • ModelData.get_index()
        • ModelData.calculate_mass_fraction()
        • ModelData.calculate_log_prior()
        • ModelData.high_resolution_lhood()
        • ModelData.low_resolution_lhood()
        • ModelData.lh_function_gib()
        • ModelData.parallel_chain()
        • ModelData.run_multiple_processes_manager_version()
        • ModelData.run_multiple_processes()
        • ModelData.create_param_full()
    • GUIBRUSHR.Retrieval.ModelCalculation.ModelSetup module
      • ModelSetup
        • ModelSetup.__init__()
        • ModelSetup.populate_from_manual_model()
        • ModelSetup.read_df_information()
        • ModelSetup.night_data_extraction()
    • GUIBRUSHR.Retrieval.ModelCalculation.ParameterHandler module
      • get_param_array_initial_value()
      • ParameterHandler
        • ParameterHandler.__init__()
        • ParameterHandler.get_index()
        • ParameterHandler.get_value()
        • ParameterHandler.parameter_management()
        • ParameterHandler.add_param_manual_model()
        • ParameterHandler.read_df_parameters()
        • ParameterHandler.build_typed_result()
        • ParameterHandler.read_df_parameters_typed()
        • ParameterHandler.create_param_full()
  • Module contents

Submodules

• GUIBRUSHR.Retrieval.debug_log module
  • Concurrency
  • Robustness
  • get_log_path()
  • init_log()
  • emit_event()
  • BufferedLogger
    • BufferedLogger.__init__()
    • BufferedLogger.emit()
    • BufferedLogger.flush()
• GUIBRUSHR.Retrieval.main module
  • parse_command_line_arguments()
  • create_model_object()
  • setup_output_directory()
  • run_map_warm_start()
  • run_mcmc_sampling()
  • cleanup_and_report_timing()
  • main()

Module contents

Retrieval Module for GUIBRUSHR

Contains all retrieval algorithms and model calculation components.