GUIBRUSHR package¶
Subpackages¶
- GUIBRUSHR.Files package
- GUIBRUSHR.GUI package
- Subpackages
- GUIBRUSHR.GUI.DataInterface package
- Submodules
- GUIBRUSHR.GUI.DataInterface.DBSQLite3 module
DBSQLite3DBSQLite3.DBDBSQLite3.cursorDBSQLite3.__init__()DBSQLite3.create_db()DBSQLite3.insert_instrument()DBSQLite3.delete_instrument_by_key()DBSQLite3.get_instruments()DBSQLite3.get_instrument_by_key()DBSQLite3.insert_retrieval_into_DB()DBSQLite3.select_retrieval_by_target()DBSQLite3.delete_retrieval_by_date()DBSQLite3.insert_observatory()DBSQLite3.delete_observatory_by_key()DBSQLite3.get_observatories()DBSQLite3.get_observatory_by_key()DBSQLite3.close_DB()
- GUIBRUSHR.GUI.DataInterface.DataInterface module
- GUIBRUSHR.GUI.DataInterface.DBSQLite3 module
- Module contents
- Submodules
- GUIBRUSHR.GUI.Input_Output_Panels package
- Subpackages
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels package
- Subpackages
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation package
- Submodules
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.Frame_LH module
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.Frame_run_CC module
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.Frame_sum_CC module
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.Notebook_Cross_Correlation module
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.run_cc_background module
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation.sum_cc_background module
- Module contents
- Submodules
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels package
- Subpackages
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FrameCCNIght package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FrameDBInteractions package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FrameGenerationHRData package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FrameManualModel package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FramePath package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.FrameTellRem package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.Frame_Parameters package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.TabPanels.Frame_Retrieval_Analysis package
- Module contents
- Subpackages
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.Frame_Cross_Correlation package
- Submodules
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.InputPanel module
InputPanelInputPanel.width_GUIInputPanel.parentInputPanel.path_defaultInputPanel.tab_managerInputPanel.frame_pathInputPanel.frame_parameterInputPanel.frame_retrieval_analysisInputPanel.frame_tell_remInputPanel.frame_manual_modelInputPanel.frame_cc_nightInputPanel.frame_simulation_HRInputPanel.frame_db_interactionsInputPanel.__init__()
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels.InputPanel module
- Module contents
- Subpackages
- GUIBRUSHR.GUI.Input_Output_Panels.Output_Panels package
- GUIBRUSHR.GUI.Input_Output_Panels.Input_Panels package
- Module contents
- Subpackages
- GUIBRUSHR.GUI.LAYOUT package
- Submodules
- GUIBRUSHR.GUI.LAYOUT.GraphicsConfig module
GraphicsConfigGraphicsConfig.ASPECT_RATIOGraphicsConfig.MIN_WIDTHGraphicsConfig.MIN_HEIGHTGraphicsConfig.MAX_WIDTHGraphicsConfig.MAX_HEIGHTGraphicsConfig.DEFAULT_WIDTHGraphicsConfig.DEFAULT_HEIGHTGraphicsConfig.SCREEN_SCALE_FACTORGraphicsConfig.MACOS_SCALE_FACTORGraphicsConfig.PANEL_MARGINGraphicsConfig.PANEL_VERTICAL_SPACINGGraphicsConfig.INPUT_PANEL_RATIOGraphicsConfig.REFERENCE_HEIGHTGraphicsConfig.MIN_SCALEGraphicsConfig.MAX_SCALEGraphicsConfig.FONT_FAMILYGraphicsConfig.FONT_FAMILY_ACCENTGraphicsConfig.FONT_SIZE_LABELGraphicsConfig.FONT_SIZE_LABEL_LARGEGraphicsConfig.FONT_SIZE_LABEL_ITALICGraphicsConfig.FONT_SIZE_LABEL_NORMALGraphicsConfig.FONT_SIZE_BUTTONGraphicsConfig.FONT_SIZE_ENTRYGraphicsConfig.FONT_SIZE_LINKGraphicsConfig.FONT_SIZE_HELP_ICONGraphicsConfig.FONT_SIZE_HELP_TITLEGraphicsConfig.FONT_SIZE_HELP_PARAMGraphicsConfig.FONT_SIZE_HELP_TEXTGraphicsConfig.FONT_SIZE_TABGraphicsConfig.FONT_SIZE_TREEGraphicsConfig.TREE_ROW_HEIGHTGraphicsConfig.PLOT_FONT_SIZE_LABELGraphicsConfig.PLOT_FONT_SIZE_TITLEGraphicsConfig.PLOT_FONT_SIZE_TICKGraphicsConfig.PLOT_FONT_SIZE_LEGEND
- GUIBRUSHR.GUI.LAYOUT.MyPanel module
- GUIBRUSHR.GUI.LAYOUT.MyTabPanel module
- GUIBRUSHR.GUI.LAYOUT.ScaleManager module
- GUIBRUSHR.GUI.LAYOUT.GraphicsConfig module
- Module contents
- Submodules
- GUIBRUSHR.GUI.WIDGET package
- Submodules
- GUIBRUSHR.GUI.WIDGET.MyButton module
- GUIBRUSHR.GUI.WIDGET.MyCheckBox module
- GUIBRUSHR.GUI.WIDGET.MyDropDown module
- GUIBRUSHR.GUI.WIDGET.MyEntry module
- GUIBRUSHR.GUI.WIDGET.MyFigure module
- GUIBRUSHR.GUI.WIDGET.MyImage module
- GUIBRUSHR.GUI.WIDGET.MyLabel module
- GUIBRUSHR.GUI.WIDGET.MyPDF module
- GUIBRUSHR.GUI.WIDGET.MyPDFWindow module
- GUIBRUSHR.GUI.WIDGET.MyPlot module
- GUIBRUSHR.GUI.WIDGET.MyTable module
- GUIBRUSHR.GUI.WIDGET.MyTextField module
- Module contents
- Submodules
- GUIBRUSHR.GUI.DataInterface package
- Module contents
- Subpackages
- GUIBRUSHR.General_Constants package
- Subpackages
- GUIBRUSHR.General_Constants.Classes package
- Submodules
- GUIBRUSHR.General_Constants.Classes.BestFitParametersAndResults module
BestFitParametersAndResultsBestFitParametersAndResults.number_bad_chainsBestFitParametersAndResults.last_max_LHBestFitParametersAndResults.current_max_likelihoodBestFitParametersAndResults.chi2_monodimensionalBestFitParametersAndResults.list_best_parsBestFitParametersAndResults.arr1BestFitParametersAndResults.best_fit_parametersBestFitParametersAndResults.value_fixBestFitParametersAndResults.lista_par_fixBestFitParametersAndResults.lista_parametriBestFitParametersAndResults.list_best_pars_labelsBestFitParametersAndResults.__init__()
- GUIBRUSHR.General_Constants.Classes.HelpButton module
- GUIBRUSHR.General_Constants.Classes.Instrument module
- GUIBRUSHR.General_Constants.Classes.Night module
NightErrorFileNotFoundErrorPersDataValidationErrorsigma_calc()NightNight.intransitNight.maskinvmNight.wlen_list_overplotNight.sigma_spectraNight.lambdasNight.spectraNight.n_good_ordersNight.n_pixelsNight.n_phases_consideredNight.good_orderNight.n_tot_phasesNight.barycentric_velocityNight.phasesNight.__init__()Night.load_aligned_and_spAb_pca()Night.fase_operation()Night.good_order_operation()Night.management_spAbi()Night.read_maskinv()Night.read_wlen_sp()Night.sigma_spectra_calc()Night.smooth_management()
- GUIBRUSHR.General_Constants.Classes.PDFViewer module
- GUIBRUSHR.General_Constants.Classes.Target module
- GUIBRUSHR.General_Constants.Classes.TemperatureProfile module
bernstein_poly()bezier_curve()TemperatureProfileTemperatureProfile.pressuresTemperatureProfile.parametersTemperatureProfile.gravityTemperatureProfile.errorTemperatureProfile.rngTemperatureProfile.__init__()TemperatureProfile.return_rnd_for_error()TemperatureProfile.isot()TemperatureProfile.guillot()TemperatureProfile.madhu()TemperatureProfile.personalized()TemperatureProfile.FourNodeSpline()
- GUIBRUSHR.General_Constants.Classes.UserTemperatureProfile module
- GUIBRUSHR.General_Constants.Classes.ValueErrorTP module
- GUIBRUSHR.General_Constants.Classes.BestFitParametersAndResults module
- Module contents
- Submodules
- GUIBRUSHR.General_Constants.FunctionsAndConstants package
- Submodules
- GUIBRUSHR.General_Constants.FunctionsAndConstants.Constant_Variables module
ConstantVariablesConstantVariables.path_defaultConstantVariables.ncoreConstantVariables.path_petitradtransConstantVariables.pathsConstantVariables.configuration_yaml_pathConstantVariables.parameters_yamlConstantVariables.molecules_yamlConstantVariables.hybrid_yamlConstantVariables.general_yamlConstantVariables.condensed_yamlConstantVariables.personalization_fileConstantVariables.WINDOW_WIDTHConstantVariables.WINDOW_HEIGHTConstantVariables.screen_widthConstantVariables.screen_heightConstantVariables.position_xConstantVariables.position_yConstantVariables.geometryConstantVariables.COLUMN_WITH_MULTIPLE_VALUESConstantVariables.NEW_COLUMN_RETRIEVAL_DBConstantVariables.NEW_COLUMN_RETRIEVAL_DB_TYPEConstantVariables.HEIGHT_TABLE_FILTERConstantVariables.NOT_VMR_METALSConstantVariables.HCNO_NEUTRALSConstantVariables.IONSConstantVariables.ALKALIConstantVariables.METALSConstantVariables.METAL_OXIDESConstantVariables.LIST_ELEMENT_FOR_HYBRIDConstantVariables.CLIGHTConstantVariables.SOLAR_TO_JUPITER_MASSESConstantVariables.AUConstantVariables.R_JUP_MEANConstantVariables.R_JUPConstantVariables.M_JUPConstantVariables.R_SUNConstantVariables.M_SUNConstantVariables.GConstantVariables.RATIO_RSUN_RJUPConstantVariables.RATIO_RSUN_RJUP_MEANConstantVariables.ALL_MOLECS_DICTConstantVariables.ALL_MOLECConstantVariables.DICT_LABELS_MOLECConstantVariables.ELEMENTS_DICTConstantVariables.ALL_ELEMENTConstantVariables.DICT_LABELS_ELEMENTSConstantVariables.PARAMS_DICTConstantVariables.PARAMS_LISTConstantVariables.LIST_MULTIPLE_PARAMConstantVariables.LIST_DERIVATIVE_PARAMSConstantVariables.LIST_MOLECULAR_PARAMSConstantVariables.LIST_INSTRUMENTAL_PARAMSConstantVariables.molecsConstantVariables.params_listConstantVariables.start_molecsConstantVariables.start_elementsConstantVariables.start_condensed_molecsConstantVariables.ALL_CONDENSED_MOLECS_DICTConstantVariables.ALL_CONDENSED_MOLECConstantVariables.CONDENSED_NAMESConstantVariables.DICT_LABELS_CONDENSED_MOLECConstantVariables.DICT_LABELSConstantVariables.COLOR_MACROConstantVariables.COLOR_SUB_NOTEBOOKConstantVariables.COLOR_SUB_NOTEBOOK_2ConstantVariables.COLOR_SUB_NOTEBOOK_3ConstantVariables.HUESConstantVariables.LIST_TAB_MACROConstantVariables.list_tab_analysisConstantVariables.list_tab_frame_parameterConstantVariables.list_tab_cross_correlation_1ConstantVariables.list_tab_cross_correlation_2ConstantVariables.list_tab_simulated_hrConstantVariables.list_tab_simulated_hr_advancedConstantVariables.LIST_TELL_TABLE_FILTERConstantVariables.LIST_CHEMISTRY_TABLE_FILTERConstantVariables.LIST_PT_PROFILE_TABLE_FILTERConstantVariables.LIST_SCATTERING_TABLE_FILTERConstantVariables.LIST_RESOLUTION_TABLE_FILTERConstantVariables.LIST_ECC_OPI_TABLE_FILTERConstantVariables.LIST_RETRIEVAL_MODE_FILTERConstantVariables.LIST_RAD_MODE_FILTERConstantVariables.LIST_SCATTERING_TABLEConstantVariables.LIST_ECC_OPI_TABLEConstantVariables.LIST_CORRELATION_METHODSConstantVariables.LIST_RAD_MODEConstantVariables.LIST_CHEMISTRY_TABLEConstantVariables.LIST_PT_PROFILE_TABLEConstantVariables.LIST_MODEL_REPROConstantVariables.LIST_STANDARDIZE_PCAConstantVariables.LIST_LIMIT_PHASESConstantVariables.LIST_TELL_TABLEConstantVariables.LIST_RESOLUTION_TABLEConstantVariables.LIST_RETRIEVAL_MODEConstantVariables.LIST_RESOLUTION_DBConstantVariables.COLUMN_DF_GENERAL_INFOConstantVariables.COLUMN_DF_PARAMETERSConstantVariables.TYPES_DF_PARAMETERSConstantVariables.CC_FOLDERConstantVariables.RESULTS_FOLDERConstantVariables.HR_INSTRUMENTSConstantVariables.LR_INSTRUMENTSConstantVariables.DICT_FILTER_TABLEConstantVariables.LIST_FILTER_TABLE_COLUMNSConstantVariables.LIST_FILTER_TABLE_COLUMN_TYPESConstantVariables.LIST_OUTPUT_TABLE_COLUMNConstantVariables.CMAPS
- GUIBRUSHR.General_Constants.FunctionsAndConstants.PTR_Modules module
- GUIBRUSHR.General_Constants.FunctionsAndConstants.general_functions module
make_smooth_mono_cmap()make_pyratbay_config()create_fits()kernel_solid_body_rotation()convolve_solid_body_rotation()convolve_resolution()create_path_night()get_csv_value()plot_tp_profile()plot_corner_metallicity()opacities_contribution_plot()calculate_mass_molecule()get_condensed_line_list()get_line_lists()generate_chemcat()read_fits()get_depth_filename()read_depth_fits()plot_vmr()get_medians()pre_plot()cross_correlation()c_correlate()w_correlate()linear_solver()skewed_gaussian()estimate_continuum()trpca()get_keys_by_value()compute_adjusted_abundance()spectral_convolution_ptr()get_stellar_model()generate_star_model_hr()rv_planet_and_star()calculate_rv_planet_and_star()rv_DopplerShadow()ask_stellar_params()download_star_spectrum()compute_transit_durations()
- GUIBRUSHR.General_Constants.FunctionsAndConstants.radvel_g module
- GUIBRUSHR.General_Constants.FunctionsAndConstants.Constant_Variables module
- Module contents
- Submodules
- GUIBRUSHR.General_Constants.Classes package
- Module contents
- Subpackages
- GUIBRUSHR.Retrieval package
- Subpackages
- GUIBRUSHR.Retrieval.ExofastMCMC package
- GUIBRUSHR.Retrieval.ModelCalculation package
- Subpackages
- GUIBRUSHR.Retrieval.ModelCalculation.Classes package
- Submodules
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Atmosphere module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Bestpars module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.LowResolutionData module
LowResolutionDataLowResolutionData.instrumentLowResolutionData.ldata_LRLowResolutionData.step_LRLowResolutionData.rdata_LRLowResolutionData.errdata_LR_plusLowResolutionData.errdata_LR_minusLowResolutionData.vsysLowResolutionData.npixLowResolutionData.lbottomLowResolutionData.ltopLowResolutionData.__init__()
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.NotRetrieval module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.ParamForModel module
ParamForModelParamForModel.nameParamForModel.statusParamForModel.scaleParamForModel.constant_vmrParamForModel.range_minParamForModel.range_maxParamForModel.isotopeParamForModel.is_molecParamForModel.molec_formulaParamForModel.massParamForModel.name_for_list_molecParamForModel.starting_value_fixedParamForModel.starting_value_fixed_arrParamForModel.starting_value_variableParamForModel.starting_value_variable_arrParamForModel.value_in_retrievalParamForModel.value_arr_in_retrievalParamForModel.sigma_priorParamForModel.sigma_prior_arrParamForModel.__init__()ParamForModel.update_starting_value()ParamForModel.get_starting_value()ParamForModel.get_starting_value_arr()ParamForModel.append_elem()ParamForModel.get_retrieval_value()ParamForModel.get_retrieval_value_arr()ParamForModel.boundaries_check()ParamForModel.is_molec_func()ParamForModel.molec_and_full_name()ParamForModel.is_VMR_costant()ParamForModel.get_mass()ParamForModel.get_sigma_prior()
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Pressure module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Random module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Resolution module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Retrieval module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Smooth module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.SpeciesMolec module
- GUIBRUSHR.Retrieval.ModelCalculation.Classes.Wavelength module
- Module contents
- Submodules
- GUIBRUSHR.Retrieval.ModelCalculation.Classes package
- Submodules
- GUIBRUSHR.Retrieval.ModelCalculation.ModelData module
get_param_array_initial_value()ModelDataModelData.path_defaultModelData.params_listModelData.list_multiple_paramModelData.clightModelData.model_typeModelData.atmosphereModelData.retrieval_dataModelData.bestpars_dataModelData.random_objModelData.__init__()ModelData.populate_from_manual_model()ModelData.add_param_manual_model()ModelData.read_df_parameters()ModelData.parameter_management()ModelData.read_df_information()ModelData.night_data_extraction()ModelData.get_value()ModelData.get_index()ModelData.calculate_mass_fraction()ModelData.calculate_det()ModelData.high_resolution_lhood()ModelData.low_resolution_lhood()ModelData.lh_function_gib()ModelData.parallel_chain()ModelData.run_multiple_processes_manager_version()ModelData.run_multiple_processes()ModelData.create_param_full()
- GUIBRUSHR.Retrieval.ModelCalculation.ModelData module
- Module contents
- Subpackages
- Submodules
- Module contents
- Subpackages
- GUIBRUSHR.scripts package
- Submodules
- GUIBRUSHR.scripts.backup_yaml module
- GUIBRUSHR.scripts.check_yaml_online module
- GUIBRUSHR.scripts.download_test_data module
- GUIBRUSHR.scripts.downloader module
- GUIBRUSHR.scripts.edit_config module
- GUIBRUSHR.scripts.edit_db module
- GUIBRUSHR.scripts.edit_yaml module
- GUIBRUSHR.scripts.git_config module
- GUIBRUSHR.scripts.help module
- Module contents
- Submodules
Submodules¶
- GUIBRUSHR.GUIBRUSHR module
WindowConfigWindowConfig.ASPECT_RATIOWindowConfig.MIN_WIDTHWindowConfig.MIN_HEIGHTWindowConfig.MAX_WIDTHWindowConfig.MAX_HEIGHTWindowConfig.DEFAULT_WIDTHWindowConfig.DEFAULT_HEIGHTWindowConfig.SCREEN_SCALE_FACTORWindowConfig.MACOS_SCALE_FACTORWindowConfig.PANEL_MARGINWindowConfig.PANEL_VERTICAL_SPACINGWindowConfig.INPUT_PANEL_RATIOWindowConfig.get_default_dimensions()WindowConfig.get_min_dimensions()WindowConfig.get_max_dimensions()WindowConfig.clamp_dimensions()WindowConfig.calculate_centered_position()WindowConfig.__init__()
GUIBRUSHRGUIBRUSHR.global_startGUIBRUSHR.widthGUIBRUSHR.heightGUIBRUSHR.displace_xGUIBRUSHR.displace_yGUIBRUSHR.path_defaultGUIBRUSHR.dialogGUIBRUSHR.windowGUIBRUSHR.frame_input_masterGUIBRUSHR.frame_output_tableGUIBRUSHR.__init__()GUIBRUSHR.initialize_window()GUIBRUSHR.on_closing()GUIBRUSHR.initialize_DB()
main()
Module contents¶
GUIBRUSHR - GUI for Bayesian Retrieval Using Spectroscopy at High Resolution.
A comprehensive Python package for atmospheric retrieval analysis using spectroscopic data at both high and low resolution.