GUIBRUSHR.Retrieval.ModelCalculation.Classes.NotRetrieval module

NotRetrieval class module for handling atmospheric retrieval calculations.

This module contains the NotRetrieval class which processes atmospheric data including volume mixing ratios (VMR), spectra, and opacity contributions for both high resolution (HR) and low resolution (LR) data.

class GUIBRUSHR.Retrieval.ModelCalculation.Classes.NotRetrieval.NotRetrieval(mass_fraction_names_hr, mass_fraction_names_lr, MMW, vmr, mean_VMR_and_MF_string, mean_VMR_and_MF_dict, wl_full_resolution_HR, depth_full_resolution_HR, wlen_mu_contribution_HR, contribution_HR, wl_full_resolution_LR, depth_full_resolution_LR, wl_binned_LR, spectrum_binned_LR, offsetLRarr, wlen_mu_contribution_LR, contribution_LR, chemistry, params_only_molec, species, opacity_contribution_HR, opacity_contribution_LR, instruments_LR, rp, rad_mode, stellar_radius, stellar_spectrum, lh_HR, lh_LR, HR_res_present, LR_res_present, use_hr_linelists_for_lr)[source]

Bases: object

A class for handling atmospheric retrieval calculations and data processing.

This class manages atmospheric data including volume mixing ratios (VMR), spectral data at different resolutions, and opacity contributions. It processes molecular species data and creates dictionaries for easy access to VMR values.

__init__(mass_fraction_names_hr, mass_fraction_names_lr, MMW, vmr, mean_VMR_and_MF_string, mean_VMR_and_MF_dict, wl_full_resolution_HR, depth_full_resolution_HR, wlen_mu_contribution_HR, contribution_HR, wl_full_resolution_LR, depth_full_resolution_LR, wl_binned_LR, spectrum_binned_LR, offsetLRarr, wlen_mu_contribution_LR, contribution_LR, chemistry, params_only_molec, species, opacity_contribution_HR, opacity_contribution_LR, instruments_LR, rp, rad_mode, stellar_radius, stellar_spectrum, lh_HR, lh_LR, HR_res_present, LR_res_present, use_hr_linelists_for_lr)[source]

Initialize the NotRetrieval class with atmospheric and spectral data.

Parameters:

  • mass_fraction_names_hr – High resolution mass fraction names

  • mass_fraction_names_lr – Low resolution mass fraction names

  • MMW – Mean molecular weight data

  • vmr – Volume mixing ratio data

  • mean_VMR_and_MF_string – Mean VMR and Molecular Fraction string

  • mean_VMR_and_MF_dict – Mean VMR and Molecular Fraction dictionary

  • wl_full_resolution_HR – Full resolution wavelength data

  • depth_full_resolution_HR – Full resolution spectrum data

  • wlen_mu_contribution_HR – High resolution wavelength contribution

  • contribution_HR – High resolution contribution data

  • wl_full_resolution_LR – Low resolution full wavelength data

  • depth_full_resolution_LR – Low resolution full spectrum data

  • wl_binned_LR – Low resolution binned wavelength data

  • spectrum_binned_LR – Low resolution binned spectrum data

  • offsetLRarr – Low resolution offset array

  • wlen_mu_contribution_LR – Low resolution wavelength contribution

  • contribution_LR – Low resolution contribution data

  • chemistry – Chemistry table selection

  • params_only_molec – Molecular parameters

  • species – List of chemical species

  • opacity_contribution_HR – High resolution opacity contribution

  • opacity_contribution_LR – Low resolution opacity contribution

  • instruments_LR – List of instruments for low resolution data

  • rp – Planet radius parameter

  • rad_mode – Radiative transfer mode selection

  • stellar_radius – Stellar radius parameter

  • stellar_spectrum – Stellar spectrum for resolution data

  • lh_HR – Likelihood dictionary for high resolution data

  • lh_LR – Likelihood dictionary for low resolution data

  • HR_res_present – Boolean indicating if high resolution data is present

  • LR_res_present – Boolean indicating if low resolution data is present

  • use_hr_linelists_for_lr – Use high resolution linelists for low resolution data

adapt_opacities(value, stellar_spectrum=None)[source]

Convert a single opacity contribution tuple to display-ready units.

Wavelength is converted from cm to nm. In transmission mode, the contribution is converted from cm to Jupiter radii.

Parameters:

  • value – Tuple of (wavelength, contribution, extra_data) arrays in cgs units

  • stellar_spectrum – Stellar spectrum array (reserved for emission mode)

Returns:

Tuple of (wavelength_nm, contribution_converted, extra_data) arrays.